Output a separate segmentation in native T2w space (in addition to current output in T1w space)

DCAN-Labs / BIBSnet

This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.

https://bibsnet.readthedocs.io/en/latest/

Apache License 2.0

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Output a separate segmentation in native T2w space (in addition to current output in T1w space) #45

Closed LuciMoore closed 1 year ago

LuciMoore commented 1 year ago

A short summary of what you would like to see in CABINET.

Required for Nibabies T2-based surface generation critical for optimal infant processing. I can help implement

Do you have any interest in helping implement the feature?

Yes!

Add any additional information or context about the request here.

No response

audreymhoughton commented 1 year ago

Output with version 2.4.2 of CABINET. Sidecar JSON implementation is in progress. Will be tracked on this issue: https://github.com/DCAN-Labs/CABINET/issues/37