Closed henrycikanek closed 1 year ago
Hi @henrycikanek , as I have specified before, please use the newest version of CABINET. Previously, I told you 2.4.0, but we also just released 2.4.2 yesterday. I also recommend taking a look at the new TSV documentation here: https://cabinet.readthedocs.io/en/stable/participants/ The usage changed between releases, so understandably, the codebase is having issues reading your TSV file.
Sounds good! Thanks for the help, am updating now
Hey, so I have updated to the latest version (2.4.2) and re-ran the manual command, however I received the same error unfortunately, any ideas what else I should check?
This was the command I used:
docker run -it \ -v /Users/sealab/Documents/MRI/BABIES/Six_Month/bids:/input \ -v /Users/sealab/Documents/MRI/BABIES/Six_Month/derivatives/CABINET:/output \ -v /Users/sealab/Documents/MRI/BABIES/Six_Month/derivatives/work/cabinet_work:/work_tmp \ -v /Users/sealab/Documents/MRI/BABIES/CABINET_parameter/parameter-file-container.json:/param_file.json \ dcanumn/cabinet:2.4.2 \ /input /output participant \ -participant 1503 \ -ses sixmonth \ -age 6 \ -jargs /param_file.json \ -end postbibsnet \ -start prebibsnet \ -w /work_tmp
error received:
`Traceback (most recent call last):
File "/home/cabinet/cabinet", line 1043, in
Have solved it:). Was the TSV's, thanks for the help!
What happened?
Essentially, when passing the 6 representing the age in months of my subject python is having an issue recognizing it as an int. Was initially trying to do this in a loop but then was attempting to bypass the issue by simpling running a single subject manually but ran into the same issue unfortunately. Sure it is not too complicated an error, but figured I'd get an extra pair of eyes. Thank you for all the help:)
What command did you use?
What version of CABINET are you using?
dcanumn/cabinet latest e28757885510 2 months ago 38.6GB (I think 2.4 just updated 2 weeks ago)
Relevant log output