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DCAN-Labs / abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
https://hub.docker.com/r/dcanumn/abcd-hcp-pipeline
BSD 3-Clause "New" or "Revised" License
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Pipeline tries to apply DWI fieldmaps to functional runs #30

Closed traceyshi closed 6 months ago

traceyshi commented 3 years ago

Pipeline by default tries to apply DWI fieldmaps to functional data, causing FMRIVolume to throw dimension mismatch errors. I tried adding intendedfor sidecars to the .json for the functional fieldmaps, but this didn’t fix the problem.

For reference, deleting/moving the DWI fieldmaps from the rawdata/fmap directory seems to avoid this error (but ideally would be great to not have to do this).

This issue was identified using HBN data from public release 7.

ericearl commented 3 years ago

@perronea I think we should make the "intended for" collection be the only thing that lets field maps get selected. And warn the user if they are processing functional data without a field map. What do you think?

arueter1 commented 3 years ago

The next version of the pipeline that will be released will have this issue resolved.

LuciMoore commented 6 months ago

issue should now be resolved - please reopen if further problems arise