Closed traceyshi closed 6 months ago
@perronea I think we should make the "intended for" collection be the only thing that lets field maps get selected. And warn the user if they are processing functional data without a field map. What do you think?
The next version of the pipeline that will be released will have this issue resolved.
issue should now be resolved - please reopen if further problems arise
Pipeline by default tries to apply DWI fieldmaps to functional data, causing FMRIVolume to throw dimension mismatch errors. I tried adding intendedfor sidecars to the .json for the functional fieldmaps, but this didn’t fix the problem.
For reference, deleting/moving the DWI fieldmaps from the rawdata/fmap directory seems to avoid this error (but ideally would be great to not have to do this).
This issue was identified using HBN data from public release 7.