search

DCAN-Labs / abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
https://hub.docker.com/r/dcanumn/abcd-hcp-pipeline
BSD 3-Clause "New" or "Revised" License
49 stars 19 forks source link

Fails for anat only data when --ignore func flag isn't specified #43

Open audreymhoughton opened 3 years ago

audreymhoughton commented 3 years ago

If you have data that contains some subjects with functional data and some without, you cannot submit one run command for the pipeline. You have submit one command for the subjects with functional data and one for the subjects without that includes the --ignore func flag.

If the pipeline could check what is in the subject directory and default to--ignore func for subjects without functional data, that would be ideal.

LuciMoore commented 8 months ago

@audreymhoughton is this still a problem?

audreymhoughton commented 8 months ago

@LuciMoore it was never fixed to my knowledge