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DCAN-Labs / abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
https://hub.docker.com/r/dcanumn/abcd-hcp-pipeline
BSD 3-Clause "New" or "Revised" License
50 stars 19 forks source link

version 0.1.0 question #56

Closed juansanchezpena closed 1 year ago

juansanchezpena commented 2 years ago

Dear ABCD developers, I am testing the newest version of abcd using the session flag. Two questions:

  1. If there are two sessions is the first one processed before the second by default?
  2. Is there anywhere in the logs or the summary that confirms pipeline version? Juan
ericearl commented 2 years ago

@juansanchezpena I'll try to answer that, but no guarantees I'm 100% right here...

  1. I think so, but not sure. Does it matter as long as they are processed? They should be processed independently, not reliant on each other for data or processing.
  2. Your docker run call should use the docker "tag" of the version you want. Using no docker tag will always give you the latest, which may change versions occasionally as features are developed and bugs are fixed.
juansanchezpena commented 2 years ago

Thanks Eric I was curious if the version was found somewhere specifically in the output files (i.e. executive summary etc) but I haven’t been able to find it J

From: Eric Earl @.> Date: Monday, January 3, 2022 at 12:21 PM To: DCAN-Labs/abcd-hcp-pipeline @.> Cc: Sanchez, Juan (NYSPI) @.>, Mention @.> Subject: Re: [DCAN-Labs/abcd-hcp-pipeline] version 0.1.0 question (Issue #56)

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@juansanchezpenahttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fjuansanchezpena&data=04%7C01%7CJuan.Sanchez%40nyspi.columbia.edu%7C90c7a16b7e924f8489be08d9cedd7510%7Cf46cb8ea79004d108ceb80e8c1c81ee7%7C0%7C0%7C637768272822816914%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=U0c%2Blan36k%2F9CrtMFscZFrY%2Ft2jh2DodRcefRSLNJ1k%3D&reserved=0 I'll try to answer that, but no guarantees I'm 100% right here...

  1. I think so, but not sure. Does it matter as long as they are processed? They should be processed independently, not reliant on each other for data or processing.
  2. Your docker run call should use the docker "tag" of the version you want. Using no docker tag will always give you the latest, which may change versions occasionally as features are developed and bugs are fixed.

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madisoth commented 1 year ago

As of v0.1.3, the version string is printed to stdout at each pipeline stage.