Clarify whether PEPolar field maps are the only BIDS-valid kind recognized by the pipeline?
Some Current Limitations subsection
"We're gonna punt on everything that was described in these first 3 paragraphs" -Thomas
Replace part about diffusion field maps and DWI processing with a link to QSIPrep
Change "automatic reading of physio data from BIDS format has not been implemented" to "will never be implemented"?
Add a link to movement regressors power plots and DCANBoldProc so readers know where to get that functionality?
Delete the word "currently" from "Software does not currently support" in last paragraph, and also remove the last sentence (which is confusing and may not even be true)
Outputs subsection
executive_summary
is now in a different place, named differently, has different contents, etc.Rerunning subsection
Special Pipelines subsection
abcd-task
module and replace with a reference/link to Greg's and Anthony's abcd-bids-tfmri-pipelineMisc subsection
Some Current Limitations subsection
"We're gonna punt on everything that was described in these first 3 paragraphs" -Thomas