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DCBIA-OrthoLab / SlicerAutomatedDentalTools

A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS
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Consider using latest `monai` version #7

Closed jamesobutler closed 2 years ago

jamesobutler commented 2 years ago

Currently if monai is not found in Slicer, the CLI are specifying to install version 0.7.0 (released Sept 2021). As of adding this extension to the Slicer extensions index, monai is now at version 0.9.1. Since monai is getting lots of updates it would be great to stay on top of using the latest versions for future improvements.

https://github.com/DCBIA-OrthoLab/SlicerAutomatedDentalTools/blob/5c13f996e1f367e131b2c2279c9b345652e3086f/ALI_CBCT/ALI_CBCT.py#L71-L75

https://github.com/DCBIA-OrthoLab/SlicerAutomatedDentalTools/blob/5c13f996e1f367e131b2c2279c9b345652e3086f/ALI_IOS/ALI_IOS.py#L64-L68

https://github.com/DCBIA-OrthoLab/SlicerAutomatedDentalTools/blob/5c13f996e1f367e131b2c2279c9b345652e3086f/AMASSS_CLI/AMASSS_CLI.py#L70-L74

Maxlo24 commented 2 years ago

Hello James, We are using a UNETR that was trained with the previous MONAI version 0.7.0 (released Sept 2021). The recent update changed the UNETR code and we are not able to use the previously trained models. This might be updated in the future when new models will be trained.

Thanks