ALI doesn't install

[juangmagic]

Greetings,

I hope this message finds you well. I'm currently utilizing version 5.6.1 of Slicer, and I've recently installed the latest Automated Dental Tools extension. However, I've noticed that the ALI panel isn't appearing in the Slicer menu as expected. It seems that it may not have installed automatically.

Best regards, Juan

[juangmagic]

It seems like conda or other dependencies are not being installed: This is the error shown in the python console:

Traceback (most recent call last): File "", line 1, in File "C:\Users\JFran\AppData\Local\slicer.org\Slicer 5.6.2\lib\Python\Lib\imp.py", line 169, in load_source module = _exec(spec, sys.modules[name]) File "", line 613, in _exec File "", line 850, in exec_module File "", line 228, in _call_with_frames_removed File "C:/Users/JFran/AppData/Local/slicer.org/Slicer 5.6.2/slicer.org/Extensions-32448/SlicerAutomatedDentalTools/lib/Slicer-5.6/qt-scripted-modules/ALI.py", line 17, in from CondaSetUp import CondaSetUpCall,CondaSetUpCallWsl ModuleNotFoundError: No module named 'CondaSetUp' Traceback (most recent call last): File "", line 1, in File "C:\Users\JFran\AppData\Local\slicer.org\Slicer 5.6.2\lib\Python\Lib\imp.py", line 169, in load_source module = _exec(spec, sys.modules[name]) File "", line 613, in _exec File "", line 850, in exec_module File "", line 228, in _call_with_frames_removed File "C:/Users/JFran/AppData/Local/slicer.org/Slicer 5.6.2/slicer.org/Extensions-32448/SlicerDentalModelSeg/lib/Slicer-5.6/qt-scripted-modules/CrownSegmentation.py", line 10, in from CondaSetUp import CondaSetUpCall,CondaSetUpCallWsl ModuleNotFoundError: No module named 'CondaSetUp' [Qt] loadSourceAsModule - Failed to load file "C:/Users/JFran/AppData/Local/slicer.org/Slicer 5.6.2/slicer.org/Extensions-32448/SlicerAutomatedDentalTools/lib/Slicer-5.6/qt-scripted-modules/ALI.py" as module "ALI" ! [Qt] Fail to instantiate module "ALI" [Qt] loadSourceAsModule - Failed to load file "C:/Users/JFran/AppData/Local/slicer.org/Slicer 5.6.2/slicer.org/Extensions-32448/SlicerDentalModelSeg/lib/Slicer-5.6/qt-scripted-modules/CrownSegmentation.py" as module "CrownSegmentation" ! [Qt] Fail to instantiate module "CrownSegmentation" [Qt] The following modules failed to be instantiated: [Qt] ALI [Qt] CrownSegmentation

[allemangD]

This may be fixed in the recent changes pushed to the extension index yesterday. Could you try un-installing and re-installing both SlicerAutomatedDentalTools and SlicerDentalModelSeg?

You could also try running the extension on the current Preview release of Slicer.

cc @GaelleLeroux if you have insight on how the recent changes might affect this.

[GaelleLeroux]

Yes, this should be corrected in the recent changes pushed. We've created a new extension 'SlicerConda' which is only available on the Preview version of Slicer. This extension is used to run our extension on a Windows system. Because of the import, it created an error in version 5.6 of Slicer. We've fixed this problem in Slicer 5.6 by removing the import at the beginning of our code, so you can now use them again on Linux.

To resume, if you're on Windows and want to use ALI and SlicerDentalModelSeg, you'll need to install the Preview version of Slicer where SlicerConda is available. Otherwise, you'll see them, but they won't work. If you're on a Linux system, you can install Slicer 5.6 or the Preview version of Slicer to use them.

Let us know if you have any problems :)

[cmfsx]

Hi

Thank you for the wonderful work. ALI not working for me as well. All others installs well but the issue come with

ERROR: Could not find a version that satisfies the requirement pytorch3d (from versions: none) ERROR: No matching distribution found for pytorch3d

I have tried several versions of 3D Slicer preview release on windows 11. It fails. AMASS works well.

Can I have some insight on how to fix this ?

Thank you