requirements.txt / setup.py

[Mateuszq28]

Can somebody provide the exact requirements.txt package list for conda/pip that will work?

I merged those two pull requests:

• https://github.com/DCC-Lab/PyTissueOptics/pull/121
• https://github.com/DCC-Lab/PyTissueOptics/pull/122

And I still get an error when after typing:

python setup.py build
python setup.py install
python -m pytissueoptics --help (same for python pytissueoptics)

File "/home/miki/anaconda3/envs/sim3/lib/python3.8/site-packages/pyface-8.0.0-py3.8.egg/pyface/base_toolkit.py", line 165, in init raise NotImplementedError(msg % (toolkit, package, name)) NotImplementedError: the null tvtk.pyface.ui.null backend doesn't implement scene_editor:SceneEditor

I used Ubuntu 22.04.3 LTS WSL2. On a Windows same error arrises. Python 3.8

Originally posted by @Mateuszq28 in https://github.com/DCC-Lab/PyTissueOptics/issues/116#issuecomment-2326593115

[Mateuszq28]

Maybe there is a problem with mayavi when it uses deprecated eggs to install. Or these eggs uses links to install dependencies and those dependencies have been updated to version that are not compatibile with mayavi itself. I tried to install mayavi directly from github site and still an error arrises. No matter which version of mayavi I use, it still crash in that point. I tried 4.8.1, 4.8.2, 4.8.3.dev.

Originally posted by @Mateuszq28 in https://github.com/DCC-Lab/PyTissueOptics/issues/116#issuecomment-2327545385

[Mateuszq28]

Is there a specific version of these packages, that should I use?

• vtk
• numpy

[Mateuszq28]

If somebody can run this, It would be useful to make pull request with new directory, in which would be anaconda or pip list dumps (requirements.txt). Package version lists, which were tested and works.

[Mateuszq28]

I would have also use some of these methods or a docker container to help maintain the project:

https://stackoverflow.com/questions/17486578/how-can-you-bundle-all-your-python-code-into-a-single-zip-file

[Mateuszq28]

124 I made pull request with a folder structure to collect environment dumps.