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DCPROGS / HJCFIT

Full maximum likelihood fitting of a mechanism directly to the entire sequence of open and shut times, with exact missed events correction.
GNU General Public License v3.0
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Sort out DCPROG projects packaging #81

Closed raquelalegre closed 8 years ago

raquelalegre commented 8 years ago

We need to know how the other DCPROGS python packages apart from HJCFIT are being installed, because they could conflict with the likelhood installation.

At the moment, likelihood's python bindings are being installed in this fashion:

C:\Users\raquel\HJCFIT\build> find ..\..\Miniconda3\lib\site-packages\dcprogs
..\..\Miniconda3\lib\site-packages\dcprogs
..\..\Miniconda3\lib\site-packages\dcprogs/data
..\..\Miniconda3\lib\site-packages\dcprogs/data/CCO.scn
..\..\Miniconda3\lib\site-packages\dcprogs/data/CH82.scn
..\..\Miniconda3\lib\site-packages\dcprogs/data/CO.scn
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/likelihood.py
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/optimization.py
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/random.py
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/_likelihood.pyd
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/_methods.py
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/__init__.py
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/__pycache__
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/__pycache__/likelihood.cpython-35.pyc
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/__pycache__/optimization.cpython-35.pyc
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/__pycache__/random.cpython-35.pyc
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/__pycache__/_methods.cpython-35.pyc
..\..\Miniconda3\lib\site-packages\dcprogs/likelihood/__pycache__/__init__.cpython-35.pyc
..\..\Miniconda3\lib\site-packages\dcprogs/__init__.py
..\..\Miniconda3\lib\site-packages\dcprogs/__pycache__
..\..\Miniconda3\lib\site-packages\dcprogs/__pycache__/__init__.cpython-35.pyc

@jenshnielsen said pip installing other packages that are also going to coexist with likelihood under ..\..\Miniconda3\lib\site-packages\dcprogs might cause some conflict when updating their metadata.

@remislp where can we learn more about those other packages?

raquelalegre commented 8 years ago

This is being kept track of in #75.