Various fixes in data adapters

[kvikshaug]

• Use cobra.medium.boundary_types.find_external_compartment to specify the extracellular compartment
• Postfix bigg metabolite identifiers with _compartment when looking up metabolites by id
• Update measurements schema, keeping growth rate separate from other fluxomics
• Constrain the model with observed growth rate, instead of including it as a measurement, when minimizing distance to observed fluxes

[codecov-io]

Codecov Report

Merging #127 into devel will increase coverage by 0.1%. The diff coverage is 69.23%.

@@            Coverage Diff            @@
##            devel     #127     +/-   ##
=========================================
+ Coverage   72.11%   72.22%   +0.1%     
=========================================
  Files          20       20             
  Lines         746      756     +10     
=========================================
+ Hits          538      546      +8     
- Misses        208      210      +2

Impacted Files	Coverage Δ
src/model/resources.py	83.33% <100%> (ø)	:arrow_up:
src/model/schemas.py	100% <100%> (ø)	:arrow_up:
src/model/modeling/driven.py	59.37% <25%> (-13.21%)	:arrow_down:
src/model/modeling/adapter.py	67.87% <65.38%> (-0.48%)	:arrow_down:
src/model/modeling/cobra_helpers.py	73.68% <90%> (+21.3%)	:arrow_up:

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