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DEIB-GECO / GMQL

GMQL - GenoMetric Query Language
http://www.bioinformatics.deib.polimi.it/geco/
Apache License 2.0
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groupby / joinby attribute names without prefixes #29

Closed marcomass closed 7 years ago

marcomass commented 7 years ago

For the groupby and joinby option of all operators make possible to express only the suffix part of a (metadata or region) attribute name.

It was working (I tested it), but now it is not, at least for MERGE. Please revise and fix it.

OlgaGorlova commented 7 years ago

Hello @marcomass , I think this was not implemented yet on metadata for groupby. May I ask you for an example query that you used?

marcomass commented 7 years ago

Hi @OlgaGorlova An example is the following (on merge, but equal examples could be for other operators): S2 = MERGE(groupby: biosample_term_name, TF_DNAse.TF.experiment_target) S1; In this case the groupby applies only on samples with TF_DNAse.TF..experiment_target; if S2 = MERGE(groupby: biosample_term_name, experiment_target) S1; the groupby now applies only on samples with experiment_target, but it should apply on all samples with metadata attribute ending with .experiment_target having whatever dot prefixes (TF..experiment_target, TF_DNAse.TF..experiment_target, ...) as done for the select joinby

marcomass commented 7 years ago

Hi @OlgaGorlova Could you fix this?