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DEIB-GECO / GMQL

GMQL - GenoMetric Query Language
http://www.bioinformatics.deib.polimi.it/geco/
Apache License 2.0
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DAG serialization & web service for remote dag execution #33

Closed marcomass closed 6 years ago

marcomass commented 7 years ago

Provide in the API the functionality to send a DAG for its execution on a remote machine by web services

marcomass commented 7 years ago

@lucananni93 @akaitoua @andreagulino @acanakoglu Hi, what's the status of this urgent issue?

lucananni93 commented 7 years ago

I have worked with @acanakoglu on this issue and it is going to be released in a TRIAL version this week. We are still encountering some problems with the logging and we have asked @akaitoua to help us on this.

lucananni93 commented 7 years ago

The service should be working at this link. In particular the REST service works with the following syntax: /queries/dag/{output} and the serialized DAG is put in the body of the POST request. Check the SWAGGER documentation for further information

akaitoua commented 7 years ago

@lucananni93 , @acanakoglu , I did not have the time to fix the logging problem. @acanakoglu we discussed the possible solution for the logging problem. Would you try to fix the logging problem or describe it to @lucananni93. This message is written based on @marcomass suggestion.

lucananni93 commented 6 years ago

Dag serialization is up and running on genomic REST-test. Please try it.

Luca

marcomass commented 6 years ago

In the renaming phase of the dataset (when deciding which name to use for a given input dataset, whether local or remote) the node search does not pass through the select semi-join node, causing an exception.