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DEIB-GECO / GMQL

GMQL - GenoMetric Query Language
http://www.bioinformatics.deib.polimi.it/geco/
Apache License 2.0
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COVER(ALL,ANY) #83

Closed eirinistam closed 6 years ago

eirinistam commented 6 years ago

Hi @akaitoua this is for u, When I run the following query I receive the error: empty input, but the dataset(I enclose all in the zip) contains everything(.gtf, metadata, schema) and must return also a none empty dataset. DATA_SET_VAR = SELECT() dataset_2; D= COVER(ALL, ANY) DATA_SET_VAR; MATERIALIZE D INTO DATA; bug report.zip

akaitoua commented 6 years ago

@eirinistam,

Your query will give empty dataset because Your down limit for the cover operation is ALL (which is in this case 6 samples) and by looking to your data i did not see any accumulation of the data that is greater than 4. Please double check your data before writing a bug in the bug list.

eirinistam commented 6 years ago

The final result has to be empty not the first select( this I mean has to retutn a non empty input to cover) and also gives the error instead of an empty dataset final result.

akaitoua commented 6 years ago

@andreagulino, I think the error in creating empty dataset comes from the profiler.

andreagulino commented 6 years ago

was already fixed