pp86
commented
6 years ago Solved; now GMQL-Cli is packaged as uber-jar.
Thanks @lucananni93
Closed pp86 closed 6 years ago
pp86
commented
6 years ago Solved; now GMQL-Cli is packaged as uber-jar.
Thanks @lucananni93
I cloned the GIT (latest commit: 884323724cbbcebdbcc2a554cab1f47880a4f663), changed in the main class the spark master to be
local[*]and packaged with maven. Compilation succeeded, but when I try to run it I get:java.lang.NoSuchMethodError: com.google.common.base.Stopwatch.elapsedMillis()J at org.apache.hadoop.mapreduce.lib.input.FileInputFormat.listStatus(FileInputFormat.java:279) at org.apache.hadoop.mapreduce.lib.input.CombineFileInputFormat.getSplits(CombineFileInputFormat.java:217) at org.apache.spark.rdd.NewHadoopRDD.getPartitions(NewHadoopRDD.scala:125) at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:252) at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:250) at scala.Option.getOrElse(Option.scala:121) at org.apache.spark.rdd.RDD.partitions(RDD.scala:250) at org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:35) at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:252) at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:250) at scala.Option.getOrElse(Option.scala:121) at org.apache.spark.rdd.RDD.partitions(RDD.scala:250) at org.apache.spark.Partitioner$$anonfun$defaultPartitioner$2.apply(Partitioner.scala:66) at org.apache.spark.Partitioner$$anonfun$defaultPartitioner$2.apply(Partitioner.scala:66) at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234) at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234) at scala.collection.immutable.List.foreach(List.scala:381) at scala.collection.TraversableLike$class.map(TraversableLike.scala:234) at scala.collection.immutable.List.map(List.scala:285) at org.apache.spark.Partitioner$.defaultPartitioner(Partitioner.scala:66) at org.apache.spark.rdd.PairRDDFunctions$$anonfun$cogroup$5.apply(PairRDDFunctions.scala:846) at org.apache.spark.rdd.PairRDDFunctions$$anonfun$cogroup$5.apply(PairRDDFunctions.scala:846) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) at org.apache.spark.rdd.RDD.withScope(RDD.scala:362) at org.apache.spark.rdd.PairRDDFunctions.cogroup(PairRDDFunctions.scala:845) at it.polimi.genomics.spark.implementation.MetaOperators.SelectMeta.MetaSelection$class.applyMetaSelect(MetaSelection.scala:42) at it.polimi.genomics.spark.implementation.MetaOperators.SelectMeta.SelectMD$metaSelection$.applyMetaSelect(SelectMD.scala:26) at it.polimi.genomics.spark.implementation.MetaOperators.SelectMeta.SelectIMDWithNoIndex$.apply(SelectIMDWithNoIndex.scala:82) at it.polimi.genomics.spark.implementation.GMQLSparkExecutor.implement_md(GMQLSparkExecutor.scala:200) at it.polimi.genomics.spark.implementation.MetaOperators.SelectMeta.StoreMD$.apply(StoreMD.scala:21) at it.polimi.genomics.spark.implementation.GMQLSparkExecutor.implement_md(GMQLSparkExecutor.scala:195) at it.polimi.genomics.spark.implementation.GMQLSparkExecutor$$anonfun$implementation$1.apply(GMQLSparkExecutor.scala:114) at it.polimi.genomics.spark.implementation.GMQLSparkExecutor$$anonfun$implementation$1.apply(GMQLSparkExecutor.scala:112) at scala.collection.LinearSeqOptimized$class.foreach(LinearSeqOptimized.scala:73) at scala.collection.mutable.MutableList.foreach(MutableList.scala:30) at it.polimi.genomics.spark.implementation.GMQLSparkExecutor.implementation(GMQLSparkExecutor.scala:112) at it.polimi.genomics.spark.implementation.GMQLSparkExecutor.go(GMQLSparkExecutor.scala:59) at it.polimi.genomics.GMQLServer.GmqlServer.run(GmqlServer.scala:23) at it.polimi.genomics.cli.GMQLExecuteCommand$.main(GMQLExecuteCommand.scala:261) at it.polimi.genomics.cli.GMQLExecuteCommand.main(GMQLExecuteCommand.scala)