I got the following error. The same query works if the output parameter is LEFT, RIGHT or CONTIG
Py4JJavaError Traceback (most recent call last)
<ipython-input-107-5dbe907d20bc> in <module>()
1 chip_promoter_0 = promoter.join(experiment=histone_marks,
2 genometric_predicate=[gl.DL(0)],
----> 3 output='INT')
~/anaconda3/lib/python3.7/site-packages/gmql/dataset/GMQLDataset.py in join(self, experiment, genometric_predicate, output, joinBy, refName, expName, left_on, right_on)
775
776 if isinstance(output, str):
--> 777 regionBuilder = self.opmng.getRegionBuilderJoin(output)
778 else:
779 raise TypeError("output must be a string. "
~/anaconda3/lib/python3.7/site-packages/py4j/java_gateway.py in __call__(self, *args)
1303 answer = self.gateway_client.send_command(command)
1304 return_value = get_return_value(
-> 1305 answer, self.gateway_client, self.target_id, self.name)
1306
1307 for temp_arg in temp_args:
~/anaconda3/lib/python3.7/site-packages/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
326 raise Py4JJavaError(
327 "An error occurred while calling {0}{1}{2}.\n".
--> 328 format(target_id, ".", name), value)
329 else:
330 raise Py4JError(
Py4JJavaError: An error occurred while calling o16493.getRegionBuilderJoin.
: java.lang.IllegalArgumentException: INT is not a region builder
at it.polimi.genomics.pythonapi.operators.OperatorManager$.getRegionBuilderJoin(OperatorManager.scala:314)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:280)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:214)
at java.lang.Thread.run(Thread.java:748)
with this query:
I got the following error. The same query works if the output parameter is LEFT, RIGHT or CONTIG