dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
Initialize of using zlib fails https://travis-ci.org/mcveanlab/DEploid/jobs/155613918#L1223
https://circleci.com/gh/mcveanlab/DEploid/285
This is not a bug, this is due to zlib 1.2.3.4, see http://zlib.net/zlib_faq.html#faq36
Tried to resolve this by installing zlib on travis and circle ci, which is diffcult to resolve