Inbreeding - Githubissues

DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

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Inbreeding #170

Closed shajoezhu closed 7 years ago

shajoezhu commented 7 years ago

Forward posterior probablity of inbreeding pg0390-cpanel single0 inbreeding

coveralls commented 7 years ago

Coverage decreased (-2.0%) to 90.772% when pulling 64737ca2863f25fa5be752cd849367f46538b025 on inbreeding into 7ea52bb0a594ab18ea6b1cd6cbc3585b16e6955b on master.

coveralls commented 7 years ago

Coverage decreased (-2.0%) to 90.772% when pulling 4d5781156c375c0e04a0bf72d348d4d66835f1d5 on inbreeding into 7ea52bb0a594ab18ea6b1cd6cbc3585b16e6955b on master.

coveralls commented 7 years ago

Coverage decreased (-2.0%) to 90.772% when pulling 4d5781156c375c0e04a0bf72d348d4d66835f1d5 on inbreeding into 7ea52bb0a594ab18ea6b1cd6cbc3585b16e6955b on master.

coveralls commented 7 years ago

Coverage decreased (-2.0%) to 90.772% when pulling af0cda5b5067f6b1a9fd2b36d700e5086116c73c on inbreeding into 05734febb1fa3b905674293f3d8a39fdc7093442 on master.

coveralls commented 7 years ago

Coverage decreased (-2.0%) to 90.772% when pulling af0cda5b5067f6b1a9fd2b36d700e5086116c73c on inbreeding into 05734febb1fa3b905674293f3d8a39fdc7093442 on master.

coveralls commented 7 years ago

Coverage decreased (-2.0%) to 90.772% when pulling 9117717310f579fe7e1192d83c84f6c0636f09ea on inbreeding into 05734febb1fa3b905674293f3d8a39fdc7093442 on master.

coveralls commented 7 years ago

Coverage decreased (-2.4%) to 90.356% when pulling 780e27e7ab13909245ceef0e08b15bfdd7c05cf3 on inbreeding into 05734febb1fa3b905674293f3d8a39fdc7093442 on master.

coveralls commented 7 years ago

Coverage decreased (-2.4%) to 90.356% when pulling 780e27e7ab13909245ceef0e08b15bfdd7c05cf3 on inbreeding into 05734febb1fa3b905674293f3d8a39fdc7093442 on master.

coveralls commented 7 years ago

Coverage decreased (-2.4%) to 90.356% when pulling 8bf0183baead9bd0fad20fb27bd73ff18dc08492 on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-2.4%) to 90.356% when pulling 83e87fc6b8309c41622f01f69c19356ade22fabe on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-2.4%) to 90.356% when pulling 83e87fc6b8309c41622f01f69c19356ade22fabe on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-4.0%) to 88.748% when pulling 3c173a67b66f8160027cc16d37592e697f8178f4 on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-4.8%) to 87.909% when pulling 8c505988b5cd3139f208997e2281c7e883f89347 on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-4.8%) to 87.909% when pulling 8c505988b5cd3139f208997e2281c7e883f89347 on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-6.4%) to 86.316% when pulling b637599c955f2e67635a0c23951318f361ecb4ed on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-6.4%) to 86.316% when pulling b637599c955f2e67635a0c23951318f361ecb4ed on inbreeding into 1eb9414ee853e2d6aa6e948ea46fccb2f93598a0 on master.

coveralls commented 7 years ago

Coverage decreased (-6.2%) to 86.499% when pulling 30b4959902f3b0628638271fd9af037d3a0aeccb on inbreeding into 366c69ce1c05203c7e33fdf4d6ec7f16706debba on master.

coveralls commented 7 years ago

Coverage decreased (-6.2%) to 86.499% when pulling 30b4959902f3b0628638271fd9af037d3a0aeccb on inbreeding into 366c69ce1c05203c7e33fdf4d6ec7f16706debba on master.

coveralls commented 7 years ago

Coverage decreased (-1.2%) to 91.568% when pulling 5643cc358c69039995c7764919b469e5682e31a9 on inbreeding into 366c69ce1c05203c7e33fdf4d6ec7f16706debba on master.