search

DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
http://deploid.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
20 stars 10 forks source link

Initial hap #175

Closed shajoezhu closed 7 years ago

coveralls commented 7 years ago

Coverage Status

Coverage decreased (-0.8%) to 85.665% when pulling 2c32d3e608190144bc7a34eb447f192747046ef2 on initialHap into 30b4959902f3b0628638271fd9af037d3a0aeccb on inbreeding.

coveralls commented 7 years ago

Coverage Status

Coverage decreased (-0.8%) to 85.665% when pulling 2c32d3e608190144bc7a34eb447f192747046ef2 on initialHap into 30b4959902f3b0628638271fd9af037d3a0aeccb on inbreeding.

coveralls commented 7 years ago

Coverage Status

Coverage increased (+5.07%) to 91.568% when pulling 6e832fb96b150d526cbc836f6381ed137215834f on initialHap into 30b4959902f3b0628638271fd9af037d3a0aeccb on inbreeding.

coveralls commented 7 years ago

Coverage Status

Coverage increased (+5.07%) to 91.568% when pulling 6e832fb96b150d526cbc836f6381ed137215834f on initialHap into 30b4959902f3b0628638271fd9af037d3a0aeccb on inbreeding.