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DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

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Ibd #179

Closed shajoezhu closed 7 years ago

coveralls commented 7 years ago

Coverage decreased (-5.3%) to 86.273% when pulling b6d9f0536eb2189a19638e63f96df2741fc3a287 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage decreased (-5.8%) to 85.741% when pulling ac8a4fdf35adba13dbbd607a0ef94b96c38d8160 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage decreased (-5.8%) to 85.741% when pulling ac8a4fdf35adba13dbbd607a0ef94b96c38d8160 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage decreased (-5.9%) to 85.622% when pulling f1cb3ff523f3a87319116956bfc27268b4bfbad6 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage decreased (-5.9%) to 85.622% when pulling f1cb3ff523f3a87319116956bfc27268b4bfbad6 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage decreased (-5.9%) to 85.629% when pulling e2cb1e9bdce2b3d12888a51cf229b36fa8ab911a on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage decreased (-5.9%) to 85.629% when pulling e2cb1e9bdce2b3d12888a51cf229b36fa8ab911a on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage increased (+1.3%) to 92.87% when pulling 406da345e2359f64b93973eb03d4d0ce73a59424 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage increased (+1.3%) to 92.87% when pulling 406da345e2359f64b93973eb03d4d0ce73a59424 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.

coveralls commented 7 years ago

Coverage increased (+1.3%) to 92.87% when pulling 406da345e2359f64b93973eb03d4d0ce73a59424 on ibd into 7e040c03ae9ca32cab026f0df048f7fc687fe944 on master.