DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
http://deploid.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
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painting posterior probability appear to be problematic at the end (3') of the sequence #190

Closed shajoezhu closed 7 years ago

shajoezhu commented 7 years ago

qt0027-cw4_seed1 withpanel single2

need to rework on fwd-bwd posterior probability normailzation

shajoezhu commented 7 years ago

pj0072-c_seed1 withpanel interpretdeploidfigure 2 pj0072-c_seed1 withpanel single0 pj0072-c_seed1 withpanel single1

closed by #205