dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
shajoezhu
commented
7 years ago
Need something like
Copyright (C) 2016-2017 University of Oxford
see examples at https://github.com/jeromekelleher/msprime/blob/master/_msprimemodule.c