check input ref, plaf, alt, in text file, the second column is a number

DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

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check input ref, plaf, alt, in text file, the second column is a number #224

Closed shajoezhu closed 7 years ago

shajoezhu commented 7 years ago

include test case, and bad input file for testing

shajoezhu commented 7 years ago

$ dEploid -plaf data/testData/bad.plaf.txt -vcf data/testData/PG0390-C.test.vcf -noPanel
Check input file: data/testData/bad.plaf.txt
Error: Bad conversion: Pf3D7_01_v3, int expected.

shajoezhu commented 7 years ago

closed by #225