introduce bad conversion exception

DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

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introduce bad conversion exception #225

Closed shajoezhu closed 7 years ago

shajoezhu commented 7 years ago

$ dEploid -plaf data/testData/bad.plaf.txt -vcf data/testData/PG0390-C.test.vcf -noPanel
Check input file: data/testData/bad.plaf.txt
Error: Bad conversion: Pf3D7_01_v3, int expected.

coveralls commented 7 years ago

Coverage increased (+0.03%) to 93.15% when pulling 40f886d980e19bf28b25644f924443d9b6b2484f on issue224 into 868bbd8377c42c71b80529dbacc24fab1acdd6c3 on master.

coveralls commented 7 years ago

Coverage increased (+0.03%) to 93.15% when pulling 40f886d980e19bf28b25644f924443d9b6b2484f on issue224 into 868bbd8377c42c71b80529dbacc24fab1acdd6c3 on master.

coveralls commented 7 years ago

Coverage increased (+0.03%) to 93.15% when pulling 704a1770307d30f837da81f53579452dacb2ca57 on issue224 into 868bbd8377c42c71b80529dbacc24fab1acdd6c3 on master.