DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

20 stars 10 forks source link

setup circle ci, and use containers to compile deploid with different compilers #226

Closed shajoezhu closed 7 years ago

shajoezhu commented 7 years ago

generate a short git url

curl -i https://git.io -F "url=https://raw.githubusercontent.com/shajoezhu/circleci-matrix/master/src/install.sh"

Note in the line

!/usr/bin/env bash

set -e

mkdir -p ~/.local/bin curl \ --fail\ --silent \ --show-error \ --location \ https://raw.githubusercontent.com/michaelcontento/circleci-matrix/master/src/circleci-matrix.sh \ -o ~/.local/bin/circleci-matrix chmod +x ~/.local/bin/circleci-matrix

change michaelcontento to shajoezhu, if the original file does not exist anymore

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 95a4437d18a5106357f958b7f40191abb7a3522c on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 1b678ac182604611683c61702a74a8b9952cd6c6 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 29b80822252ef8bb95ad138b17668d786daf6512 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 8565c057a789a70b8583622f3625d5d691eba8d0 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 7e91d5ddd4d2dd35bc8f35c3182d17cc64e132c5 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 59b9cb25233b8886e53f907d02f11b7acc07463f on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 1dead537bf58342af3349ead691f5483dc6a2ba1 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 233d854d4bd970aabf4198cae49873ef1604f043 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 233d854d4bd970aabf4198cae49873ef1604f043 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 233d854d4bd970aabf4198cae49873ef1604f043 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling b02f909db0dd54f1e92fc02fb2d2be9e22a41d9c on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 7cd682f75754d53cd2aed4454ee3eb5bb588f80b on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 64ac1cc4d694f352a32eb0449f6316397083d54a on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 95cbe48e49e323f169a2bca5b808923eefc369c8 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 95cbe48e49e323f169a2bca5b808923eefc369c8 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 496158e477b5ce66fc31b1cc6e36d31ee54eef96 on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 55e0d4d6b3fddf1e8eae452a818095bd48f7f1cd on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 55e0d4d6b3fddf1e8eae452a818095bd48f7f1cd on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage decreased (-1.7%) to 91.434% when pulling 55e0d4d6b3fddf1e8eae452a818095bd48f7f1cd on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage decreased (-1.7%) to 91.434% when pulling 55e0d4d6b3fddf1e8eae452a818095bd48f7f1cd on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

coveralls commented 7 years ago

Coverage remained the same at 93.15% when pulling 55e0d4d6b3fddf1e8eae452a818095bd48f7f1cd on issue207 into d638c70db979fa3ff83590d9dda53f4ca28d4e38 on master.

shajoezhu commented 7 years ago

close #207