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DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

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Improve ibd #235

Closed shajoezhu closed 6 years ago

shajoezhu commented 6 years ago

compute ibd probabilities only on the effective haplotypes
change default number of strains to 4. 5 is not necessary
update plotting interpretation utilities

coveralls commented 6 years ago

Changes Unknown when pulling 98350fb14ec0498577fcfdc21197cc68f7f55f6b on improveIBD into on master.

coveralls commented 6 years ago

Changes Unknown when pulling 98350fb14ec0498577fcfdc21197cc68f7f55f6b on improveIBD into on master.