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DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
http://deploid.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
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Issue237 #243

Closed shajoezhu closed 6 years ago

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-1.7%) to 89.287% when pulling b33dc76f3dafad72c58784c12158002241919c16 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-1.7%) to 89.287% when pulling b33dc76f3dafad72c58784c12158002241919c16 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-1.6%) to 89.451% when pulling a78ca938f9d43f1e7c521ebaf58286720c8374d2 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-1.6%) to 89.451% when pulling a78ca938f9d43f1e7c521ebaf58286720c8374d2 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-74.5%) to 16.511% when pulling 99954572947803f57b73b09bea7c6652b38b9065 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-74.5%) to 16.511% when pulling 99954572947803f57b73b09bea7c6652b38b9065 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-1.9%) to 89.113% when pulling 404b741b1300948b57f1fd2be06b48aff642a486 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-1.1%) to 89.864% when pulling 09285ed83c3d33d045735f59ed2dc41f9eca56b0 on issue237 into 2e78f2a5632dae029ad24e0cec69a7532a0647fc on master.