DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
http://deploid.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
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vqslod trimming is starting at the wrong place #283

Closed shajoezhu closed 6 years ago

shajoezhu commented 6 years ago

Describe the bug A clear and concise description of what the bug is. In the log file, it records which version of dEploid was used. Please include dEploid version. Something like:

dEploid version: 99954572947803f57b73b09bea7c6652b38b9065

To Reproduce Steps to reproduce the behavior:

  1. Include exact command that was used.
  2. Include random seed was used.
  3. Include parameters were used.
  4. See error

Expected behavior A clear and concise description of what you expected to happen.

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