dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
As the lasso version and best practice use customised panel, and was done chromosomes by chromosomes, exportpostprob for haplotypes do not reflect for the panel.
Need to reconsider this problem.
For now, create conflict warning, and throw error when this noticed
As the lasso version and best practice use customised panel, and was done chromosomes by chromosomes, exportpostprob for haplotypes do not reflect for the panel.
Need to reconsider this problem.
For now, create conflict warning, and throw error when this noticed