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DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
http://deploid.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
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Check acceptance rate #323

Closed shajoezhu closed 4 years ago

shajoezhu commented 4 years ago

DEploid best

Redo k inference when acceptance rate is low

shajoezhu commented 4 years ago

This takes too long. Depends on sample and data. Drop this idea