fix parameters when enable -best, parameters can still be overwritten when asked

DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

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fix parameters when enable -best, parameters can still be overwritten when asked #338

Open shajoezhu opened 3 years ago

shajoezhu commented 3 years ago

seed
sigma
number of samples
burn rate

shajoezhu commented 3 years ago

-sigma 1.6 -vqslod 8 -k 4

-nSample 500 -rate 8 -burn 0.67 -sigma 2.0 -vqslod 8

see #284

shajoezhu commented 3 years ago

sigma as 1.6 or 2, needs to be decided. will need to rerun the github action to determine