Handle AD fields with a dot (e.g. `76,.`) from octopus. - Githubissues

DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

20 stars 10 forks source link

Handle AD fields with a dot (e.g. `76,.`) from octopus. #345

Closed bredelings closed 3 years ago

bredelings commented 3 years ago

Also give better error messages when AD fields fail to parse, because of (for example) the wrong number of fields.

See issue #344.

coveralls commented 3 years ago

Pull Request Test Coverage Report for Build 1202

0 of 0 changed or added relevant lines in 0 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage increased (+6.2%) to 88.735%

Totals
Change from base Build 1174:	6.2%
Covered Lines:	2560
Relevant Lines:	2885

💛 - Coveralls

shajoezhu commented 3 years ago

Many thanks! @bredelings