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DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
http://deploid.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
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Dp1 #350

Closed bredelings closed 3 years ago

bredelings commented 3 years ago

Commit 0010312 illustrates "summing out" a haplotype.

bredelings commented 3 years ago

This branch is getting replaced by new_mcmc_move