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DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

http://deploid.readthedocs.io/en/latest/index.html

GNU General Public License v3.0

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New GitHub actions #353

Closed bredelings closed 3 years ago

bredelings commented 3 years ago

This PR copies everything from travis over to github except:

downloading the github tarball and compiling it 2 extra times
coveralls

It runs the tests on both linux and mac, and tests both gcc and clang on linux.

Currently gcc-9 and gcc-10 are tested.

2c71a4b is a bugfix that could go into master separately -- I fixed it here because warnings from it were making the logs hard to read.

For coveralls, there is a github action at: https://github.com/marketplace/actions/coveralls-github-action

coveralls commented 3 years ago

Pull Request Test Coverage Report for Build 1263

0 of 0 changed or added relevant lines in 0 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage remained the same at 89.972%

Totals
Change from base Build 1209:	0.0%
Covered Lines:	2611
Relevant Lines:	2902

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