dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
This PR copies everything from travis over to github except:
It runs the tests on both linux and mac, and tests both gcc and clang on linux.
Currently gcc-9 and gcc-10 are tested.
2c71a4b is a bugfix that could go into master separately -- I fixed it here because warnings from it were making the logs hard to read.
For coveralls, there is a github action at: https://github.com/marketplace/actions/coveralls-github-action