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DEploid-dev / DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
http://deploid.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
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mac compiling issue #360

Closed shajoezhu closed 1 year ago

shajoezhu commented 1 year ago

mach_o::relocatable::Parser::parse(mach_o::relocatable::ParserOptions const&) + 4989

shajoezhu commented 1 year ago

See solution at https://stackoverflow.com/questions/73714336/xcode-update-to-version-2395-ld-compile-problem-occurs-computedatomcount-m/73765819#73765819

Downgrade the xcode to 13.0

Downgrade your command line tools version to 13.4 and it will be resolved.

First download command line tools from the apple developers site and install it: https://download.developer.apple.com/Developer_Tools/Command_Line_Tools_for_Xcode_13.4/Command_Line_Tools_for_Xcode_13.4.dmg

You can change the version using the following command:

sudo xcode-select --switch /Library/Developer/CommandLineTools To check the version of currently selected xcode command line tools, use the following command:

pkgutil --pkg-info=com.apple.pkg.CLTools_Executables Make sure it is 13.4.