DEploid-dev / dEploidPaper

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deconvolute elife asia/africa mixed samples #18

Open shajoezhu opened 7 years ago

shajoezhu commented 7 years ago

e-life samples to deconvolute (present in Pf3K)

(PF0077-C, PF0624-C, PF0651-C)

I used Afica panel 2, 4, 4 respectively to deconvolve the samples, with ten most diverse asia samples. I only did for chromosome 1 and 14

They are present two strains, but it seems to be difficult to separate the two. Red color denotes painting probabilities from Africa, orange is Asia

PF0624-C pf0624-c_pf3d7_14_v3_painting

PF0651-C pf0651-c_pf3d7_14_v3_painting