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DIAGNijmegen / pathology-whole-slide-data

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
https://diagnijmegen.github.io/pathology-whole-slide-data/
Apache License 2.0
86 stars 24 forks source link

mask to xml/json overhaul #48

Closed JoeySpronck closed 7 months ago

JoeySpronck commented 7 months ago

In the current version of WSD there are many bugs in the code to make XMLs from masks.

I made many improvements and rewrote functions. Im not sure though how you would like merge the changes. Im not sure if all these changes will break other code, therefore, I'll make a PR with all changes in a single script that converts masks to xml/json, so you can check everything easily in that single file.

martvanrijthoven commented 7 months ago

Thanks Joey, sorry for my late response. For me fine to merge as is