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DIAGNijmegen / picai_labels

Annotations for the PI-CAI Challenge: Public Training and Development Dataset
https://pi-cai.grand-challenge.org/
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Annotated case IDs #4

Closed xychen2022 closed 2 years ago

xychen2022 commented 2 years ago

Hi,

Is there a file that keep a record of the ID of cases that have ground truth labels? I think it would be better for participators to use the data if such a file is available.

Thanks, Xiaoyang

joeranbosma commented 2 years ago

Hi @xychen2022,

We have a list available in the accompanying repository picai_baseline. When you have this installed, you can access this list by importing it from Python:

from picai_baseline.splits import subject_list_annotated

We have also prepared cross-validation splits, both for the full dataset of 1500 cases and the manually annotated subset of 1295 cases. You can find details about that here: https://github.com/DIAGNijmegen/picai_baseline#cross-validation-splits. There, we also provide instructions on how to export the cross-validation splits to files.

Hope this helps, let me know if you have any more queries. Joeran