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DIDSR / iMRMC

iMRMC: Software to do multi-reader multi-case analysis of reader studies
http://didsr.github.io/iMRMC/
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Run iMRMC by command #106

Closed qigongFDA closed 7 years ago

qigongFDA commented 8 years ago

We want to run iMRMC software by command. And software should output the same thing as Save All Stat button.

qigongFDA commented 8 years ago
  1. Create commandStartFunction.java class to run iMRMC by command line, in format (java -jar "compiled file name" "input file path and name".
  2. Both raw and summary files could be loaded by command line.
  3. Create commandStart flag in MRMC.java to track the software is launched in GUI or command line.
  4. Add return function in InputFile.java. It avoids software crash, when user choose an invalid input file.
qigongFDA commented 8 years ago

Could we close this issue?

brandon-gallas commented 8 years ago

Have you written instructions in the user manual for doing the command line execution?

qigongFDA commented 8 years ago

I have wrote instructions about how to run it in command line. I will merge it in whole manual with Jessica.

qigongFDA commented 7 years ago

We could close this issue.

brandon-gallas commented 7 years ago

I have run this in windows and linux. I get the same error in both. Here is the output.

sim-15-01-22-17-49-14-00000.imrmc Found NR: in header. NR= 5 Found N0: in header. N0= 50 Found N1: in header. N1= 50 Found NM: in header. NM= 2 a total of 11 lines in header readerIDs: {1=0, 2=1, 3=2, 4=3, 5=4} normalIDs: {1=0, 10=1, 11=2, 12=3, 13=4, 14=5, 15=6, 16=7, 17=8, 18=9, 19=10, 2=11, 20=12, 21=13, 22=14, 23=15, 24=16, 25=17, 26=18, 27=19, 28=20, 29=21, 3=22, 30=23, 31=24, 32=25, 33=26, 34=27, 35=28, 36=29, 37=30, 38=31, 39=32, 4=33, 40=34, 41=35, 42=36, 43=37, 44=38, 45=39, 46=40, 47=41, 48=42, 49=43, 5=44, 50=45, 6=46, 7=47, 8=48, 9=49} diseaseIDs: {100=0, 51=1, 52=2, 53=3, 54=4, 55=5, 56=6, 57=7, 58=8, 59=9, 60=10, 61=11, 62=12, 63=13, 64=14, 65=15, 66=16, 67=17, 68=18, 69=19, 70=20, 71=21, 72=22, 73=23, 74=24, 75=25, 76=26, 77=27, 78=28, 79=29, 80=30, 81=31, 82=32, 83=33, 84=34, 85=35, 86=36, 87=37, 88=38, 89=39, 90=40, 91=41, 92=42, 93=43, 94=44, 95=45, 96=46, 97=47, 98=48, 99=49} modalityIDs: {1=0, 2=1} caseIDs: {} Input Raw File Successfully Read! Exception in thread "main" java.lang.StringIndexOutOfBoundsException: String index out of range: -1 at java.lang.String.substring(String.java:1911) at mrmc.gui.GUInterface$SaveAllStatListener.exportResult(GUInterface.java:637) at mrmc.core.cmonnandStartFunction.cmonnandStartFunction(cmonnandStartFunction.java:49) at mrmc.core.MRMC.main(MRMC.java:103)

qigongFDA commented 7 years ago

Maybe you didn't use the full path name for input file.

brandon-gallas commented 7 years ago

You are correct. I didn't read the instructions carefully enough. Thanks. It works in Windows. Unfortunately, it doesn't work in Linux.

brandon-gallas commented 7 years ago

There was an update to version 3p0 that I didn't have. It works as advertised. Nice job.