Analysis of undirectional WGBS data can improved by estimating the most likely orientation. To this aim the already existing WGBS_read_pair_reconstruction.py script was updated and integrated into the workflow
extensive refactoring including a solution for deconvoluting pipe-chains
import of code from the BamToFastqWorkflow (on the long run this library code should maybe go to another library or the DefaultPlugin -- but not now ... no time)
Analysis of undirectional WGBS data can improved by estimating the most likely orientation. To this aim the already existing
WGBS_read_pair_reconstruction.pyscript was updated and integrated into the workflow