Refactorings in 1.2.73 release branch, mostly BWA top-level job scripts - Githubissues

DKFZ-ODCF / AlignmentAndQCWorkflows

The DKFZ alignment workflow plugin originally developed at the eilslabs

https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki

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Refactorings in 1.2.73 release branch, mostly BWA top-level job scripts #51

Closed vinjana closed 5 years ago

vinjana commented 5 years ago

improved code layout
renamed few temp-files
better Bash quoting
moved "mv" commands to the very end