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DKMS-LSL / typeloader

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Error message misleading on non-sense strand sequence #49

Open irunonayran opened 3 weeks ago

irunonayran commented 3 weeks ago

When supplying a reverse complemented sequence, typeloader complains about a missing UTR. Would be nice if it could say that the sequence seems reverse complemented (if not outright reverse complement the sequence on its own). That seems easy to infer, basically Hsp_hit-from > Hsp_hit-to.

bmschoene commented 3 weeks ago

Thanks for suggesting this. I will add it to the list of things to look at for the next release, but it will probably be a while until I can get to it.

Currently, TypeLoader is not equipped to handle reverse sequences, so you'll have to reverse-complement them yourself before you can add them. (You can upload them as fasta.)