search

DKMS / Hapl-o-Mat

A software for haplotype inference
Other
11 stars 7 forks source link

Download of alpha.v3.zip fails #8

Closed quokka-caredx closed 3 years ago

quokka-caredx commented 4 years ago

$ python BuildData.py Download data files Download hla_nom_p.txt Download hla_nom_g.txt Download alpha.v3.zip Traceback (most recent call last): File "BuildData.py", line 99, in buildData() File "BuildData.py", line 49, in buildData DownloadData.downloadAndExtractData() File "~/Hapl-o-Mat/prepareData/DownloadData.py", line 46, in downloadAndExtractData urlretrieve('https://bioinformatics.bethematchclinical.org/HLA/alpha.v3.zip', filename='alpha.v3.zip') File "/usr/lib/python3.7/urllib/request.py", line 288, in urlretrieve % (read, size), result) urllib.error.ContentTooShortError: <urlopen error retrieval incomplete: got only 26181632 out of 30022869 bytes>

usolloch commented 3 years ago

In the latest update (Update_EFI2021) we included the possibility to process the necessary data files after manual download. The process is described in the manual (detailedExplanationPrepareData.doc).