DMU-lilab pTrimmer issues

DMU-lilab / pTrimmer

Used to trim off the primer sequence from mutiplex amplicon sequencing

GNU General Public License v3.0

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issues

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What hapens if there is an insertion or deletion

#28 ddrazoh opened 3 weeks ago
2
Error message

#27 vera-rykalina opened 4 months ago
5
Add primer name to fastq read names

#26 OscarAspelin opened 5 months ago
1
Best practice: pTrimmer before read QC or after?

#25 jacaravas opened 7 months ago
2
Feature Request: Compressed gz output

#24 ammaraziz closed 5 months ago
4
pTrimmer seems to miss primers badly in some cases.

#23 yangjw1996 closed 10 months ago
2
How the amplicon is counted and How insertion length is used in this program?

#22 yangjw1996 closed 10 months ago
3
Does the output show which primer pair was removed from each read?

#21 peterjc closed 10 months ago
6
Support for IUPAC ambiguity codes other than N?

#20 peterjc opened 2 years ago
1
Possible enhancement: Could this support FASTA input?

#19 peterjc opened 2 years ago
1
Spelling errors in command line help

#18 peterjc closed 2 years ago
1
read length

#17 ajinkyakhilari closed 2 years ago
1
Made the shebang python path general

#16 niemasd closed 3 years ago
0
Conversion from BED + reference genome sequence to amplicon_file.txt format?

#15 niemasd closed 3 years ago
6
Merge pull request #1 from DMU-lilab/master

#14 XLZH closed 10 months ago
0
More informative debug output

#13 jtremblay closed 3 years ago
5
Buffer overflow detected

#12 rubiscore closed 3 years ago
0
zero-nucleotide trimmed reads are included in the trimmed FASTQ file.

#11 MNM-TB closed 3 years ago
1
Output replaced by N's

#10 MNM-TB closed 3 years ago
2
Segmentation Fault

#9 donutbrew closed 4 years ago
5
New release version

#8 FelixMoelder closed 4 years ago
4
Add support for macOS

#7 FelixMoelder closed 4 years ago
0
pTrimmer producers improperly paired fastQ files

#6 marchoeppner closed 4 years ago
5
Documentation out of date

#5 marchoeppner closed 4 years ago
2
Empty sequence caused by too short opposite primer at 3'-end

#4 XLZH closed 4 years ago
3
empty sequence being added to trimmed fastqs

#3 raphenya closed 4 years ago
5
Merge pull request #1 from DMU-lilab/master

#2 XLZH closed 4 years ago
0
Testing the software results in segmentation fault

#1 telatin closed 5 years ago
3