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DOI-USGS / dataRetrieval

This R package is designed to obtain USGS or EPA water quality sample data, streamflow data, and metadata directly from web services.
https://doi-usgs.github.io/dataRetrieval/
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Call the WQP on the `/data/` path instead of on the direct `/Result` , `/Activity`, `/Station` paths #501

Closed jkreft-usgs closed 4 years ago

jkreft-usgs commented 4 years ago

The /data/ path is the preferred way to access WQP data, so https://www.waterqualitydata.us/data/Result/ instead of https://www.waterqualitydata.us/Result/

Many of the newer WQP endpoints do not support the direct and as we move to new hosting solutions, we would like to move away from supporting the legacy mappings.

jordansread commented 4 years ago

Does this also apply to POSTs to https://www.waterqualitydata.us/Result/search? I tried adding data and got failures

jkreft-usgs commented 4 years ago

It would apply to POSTs as well as GETs What is the request that you are sending? I wouldn't be surprised if POSTs don't work with redirects as well as they should.

jordansread commented 4 years ago

I am using part of the workaround in #434 , like this:

wqp_url <- "https://www.waterqualitydata.us/Result/search"

  wqp_args_list$siteid <- wqp_args_list$siteid
  post_body = jsonlite::toJSON(wqp_args_list, pretty = TRUE)

  download_location <- tempfile(pattern = ".zip")
  pull_metadata <- POST(paste0(wqp_url,"?mimeType=tsv&zip=yes"),
                        body = post_body,
                        content_type("application/json"),
                        accept("application/zip"),
                        httr::write_disk(download_location))

  headerInfo <- httr::headers(pull_metadata)
  unzip_location <- tempdir()
  unzipped_filename <- utils::unzip(download_location, exdir=unzip_location)
  unlink(download_location)
  if (length(unzipped_filename) == 0){
    stop('error extracting from zip file')
  }
  dat_out <- suppressWarnings(
    read_delim(
      unzipped_filename,
      col_types = cols(`ActivityStartTime/Time` = col_character(),
                       `ActivityEndTime/Time` = col_character(),
                       USGSPCode = col_character(),
                       ResultCommentText=col_character(),
                       `ActivityDepthHeightMeasure/MeasureValue` = col_number(),
                       `DetectionQuantitationLimitMeasure/MeasureValue` = col_number(),
                       ResultMeasureValue = col_number(),
                       `WellDepthMeasure/MeasureValue` = col_number(),
                       `WellHoleDepthMeasure/MeasureValue` = col_number(),
                       `HUCEightDigitCode` = col_character(),
                       `ActivityEndTime/TimeZoneCode` = col_character()),
      quote = "", delim = "\t"))
  unlink(unzipped_filename)
  return(dat_out)

So far, seems slower than on 1/14 (haven't gotten data back yet on the request, so I don't know how long it will take)

jordansread commented 4 years ago

we use this ☝️ to create partitions of calls based on how many records the various sites have, then we use POSTs will a bunch of monitoring IDs. I guess we could do something similar with a larger number of GETs

jkreft-usgs commented 4 years ago

Gotcha. You should definitely change the wqp_url to https://www.waterqualitydata.us/data/Result/search . As for if it is faster or slower, that's going to be an interesting thing to figure out. This cloud is a whole new world for data access applications!

jordansread commented 4 years ago

yeah, switching to https://www.waterqualitydata.us/data/Result/search is a 400

Response [https://www.waterqualitydata.us/data/Result/search?mimeType=tsv&zip=yes]
  Date: 2020-01-18 12:44
  Status: 400
  Content-Type: <unknown>

post body is kinda big, but not crazy big:

{
  "characteristicName": ["Depth, Secchi disk depth", "Depth, Secchi disk depth (choice list)", "Secchi Reading Condition (choice list)", "Secchi depth", "Water transparency, Secchi disc"],
  "siteid": ["MNPCA-19-0027-00-204", "MNPCA-11-0305-00-205", "MNPCA-69-0375-00-202", "WIDNR_WQX-643126", "MNPCA-82-0049-00-204", "MNPCA-27-0133-05-208", "MNPCA-18-0227-02-201", "MNPCA-19-0031-00-201", "MNPCA-02-0053-00-451", "WIDNR_WQX-503090", "WIDNR_WQX-213136", "WIDNR_WQX-193006", "MNPCA-69-0700-00-202", "MNPCA-01-0123-00-201", "MNPCA-86-0293-00-201", "MNPCA-11-0355-00-201", "MNPCA-86-0229-00-201", "MNPCA-30-0136-00-202", "MNPCA-19-0025-00-401", "MNPCA-77-0084-02-226", "WIDNR_WQX-643051", "MNPCA-01-0204-00-204", "MNPCA-56-0639-00-201", "MNPCA-11-0268-00-201", "MNPCA-21-0123-00-202", "WIDNR_WQX-583101", "MNPCA-01-0091-00-205", "MNPCA-34-0079-00-208", "MNPCA-18-0385-00-201", "MNPCA-38-0404-00-100", "MNPCA-56-0378-02-201", "MNPCA-56-0387-00-203", "MNPCA-49-0133-00-202", "MNPCA-44-0003-00-202", "MNPCA-34-0032-00-201", "MNPCA-29-0061-00-203", "MNPCA-38-0744-00-201", "WIDNR_WQX-403111", "MNPCA-03-0304-00-201", "MNPCA-13-0012-02-201", "WIDNR_WQX-443087", "WIDNR_WQX-033142", "WIDNR_WQX-443059", "MNPCA-31-0921-00-201", "MNPCA-21-0291-00-201", "WIDNR_WQX-663099", "MNPCA-82-0118-00-451", "WIDNR_WQX-443173", "MNPCA-27-0160-00-401", "MNPCA-11-0305-00-209", "WIDNR_WQX-033161", "WIDNR_WQX-443111", "MNPCA-82-0049-00-205", "MNPCA-18-0355-00-202", "WIDNR_WQX-653219", "WIDNR_WQX-433247", "WIDNR_WQX-073080", "MNPCA-11-0283-00-203", "WIDNR_WQX-643059", "MNPCA-62-0039-00-201", "MNPCA-56-0130-00-207", "MNPCA-29-0162-00-201", "MNPCA-31-0392-00-207", "MNPCA-86-0217-00-201", "MNPCA-16-0143-00-204", "MNPCA-02-0072-00-201", "MNPCA-31-0719-00-210", "MNPCA-56-0437-00-202", "MNPCA-04-0120-00-202", "MNPCA-27-0042-03-101", "WIDNR_WQX-043116", "WIDNR_WQX-363080", "WIDNR_WQX-583072", "MNPCA-73-0086-00-208", "MNPCA-65-0006-00-202", "MNPCA-01-0062-00-209", "MNPCA-69-0218-00-202", "WIDNR_WQX-113079", "MNPCA-17-0003-00-202", "USGS-480552098145300", "WIDNR_WQX-173229", "MNPCA-31-0786-00-206", "MNPCA-26-0282-00-201", "MNPCA-70-0076-00-201", "WIDNR_WQX-10031172", "MNPCA-21-0090-00-201", "COEOMAHA_WQX-FTRLK0880A", "MNPCA-11-0504-00-203", "MNPCA-69-0378-02-212", "MNPCA-30-0135-00-203", "MNPCA-49-0019-00-201", "MNPCA-82-0001-00-210", "MNPCA-69-0161-00-201", "MNPCA-56-0243-00-203", "USGS-473629101154100", "MNPCA-18-0256-00-202", "MNPCA-16-0023-00-201", "MNPCA-34-0224-00-201", "MNPCA-38-0530-00-100", "MNPCA-24-0028-00-202", "MNPCA-38-0351-00-100", "MNPCA-10-0218-00-100", "WIDNR_WQX-683307", "MNPCA-86-0023-00-203", "MNPCA-69-0513-00-201", "WIDNR_WQX-353195", "PIIC_WQX-GL1", "MNPCA-26-0002-00-217", "MNPCA-31-0782-00-201", "MNPCA-02-0133-00-401", "11NPSWRD_WQX-ISRO_04", "NALMS-4009", "MNPCA-27-0133-02-307", "21IOWA_WQX-22410002", "MNPCA-86-0146-00-101", "MNPCA-44-0038-00-201", "MNPCA-10-0018-00-100", "21IOWA_WQX-22240002", "MNPCA-86-0213-00-201", "MNPCA-29-0048-00-205", "21IOWA_WQX-22300009", "MNPCA-62-0007-00-201", "EPA_GLNPO-HU45M", "SDWRAP-RICHMON06", "MNPCA-03-0195-00-201", "MNPCA-75-0200-00-100", "EPA_GLNPO-HU48", "WIDNR_WQX-103131", "MNPCA-38-0400-00-100", "MNPCA-01-0137-00-202", "21IOWA_WQX-22980001", "SDDENR_WQX-STOCKAD01D", "MNPCA-31-0610-00-202", "WIDNR_WQX-693176", "WIDNR_WQX-353090", "MNPCA-60-0202-00-201", "MNPCA-11-0043-01-207", "WIDNR_WQX-10031335", "MNPCA-50-0002-00-207", "MNPCA-10-0217-00-100", "WIDNR_WQX-10033642", "MNPCA-27-0016-00-202", "MNPCA-04-0030-00-208", "MNPCA-86-0023-00-202", "MNPCA-06-0152-00-108", "MNPCA-82-0159-00-201", "MNPCA-04-0343-00-205", "MNPCA-69-0003-00-203", "EPA_GLNPO-SU06", "MNPCA-69-0542-00-201", "IL_EPA_WQX-RNC-2", "MNPCA-48-0002-00-204", "21IOWA_WQX-22300004", "MNPCA-49-0016-00-205", "WIDNR_WQX-043165", "MNPCA-10-0018-00-202", "MNPCA-69-0693-00-201", "USGS-424207088072400", "MNPCA-47-0088-00-202", "WIDNR_WQX-10043760", "MNPCA-27-0133-02-207", "SDDENR_WQX-SWLAZZZ4807", "MNPCA-01-0078-00-201", "MNPCA-46-0025-00-201", "WIDNR_WQX-323101", "MNPCA-27-0098-00-201", "NALMS-3074", "MNPCA-04-0230-00-100", "MNPCA-51-0081-00-201", "WIDNR_WQX-243018", "MNPCA-15-0086-00-201", "MNPCA-69-0694-00-254", "WIDNR_WQX-613182", "MNPCA-18-0409-00-201", "MNPCA-86-0068-00-201", "USGS-425044088100300", "MNPCA-21-0264-00-201", "MNPCA-73-0196-00-205", "WIDNR_WQX-443478", "MNPCA-18-0088-00-206", "MNPCA-69-0694-00-215", "WIDNR_WQX-583146", "MNPCA-06-0002-00-203", "MNPCA-69-0736-00-202", "SDDENR_WQX-SWLAZZZ9207", "21IOWA-22770001", "MNPCA-27-1045-01-451", "MNPCA-77-0019-00-101", "WIDNR_WQX-10039137", "MNPCA-03-0189-00-204", "MNPCA-33-0003-00-101", "MNPCA-69-0161-00-202", "SDWRAP-MARSHALSBUFL03", "MNPCA-03-0526-00-201", "MNPCA-38-0404-00-201", "NALMS-3481", "SDWRAP-SWLAZZZ9702", "IL_EPA-RNC-1", "MNPCA-18-0080-00-201", "MNPCA-43-0034-00-202", "MNPCA-77-0151-00-201", "SDDENR_WQX-CRESLOYCL02", "STCROIX_WQX-9", "21IOWA-22590002", "MNPCA-11-0413-00-205", "MNPCA-31-0789-00-201", "MNPCA-66-0055-00-201", "NALMS-4262", "STCROIX_WQX-16", "USGS-434414089282400", "MNPCA-03-0381-00-202", "MNPCA-31-0023-00-202", "MNPCA-46-0109-00-101", "MNPCA-86-0067-00-201", "SDDENR_WQX-SWLAZZZ2408", "USGS-410223093481800", "LCOWIS_WQX-E-6", "MNPCA-18-0038-00-101", "MNPCA-31-0156-00-202", "MNPCA-56-0160-00-101", "MNPCA-86-0046-00-201", "SDDENR_WQX-CRESLOYLD02", "SDWRAP-RICHMON011", "21IOWA-22060001", "MNPCA-03-0381-00-210", "MNPCA-24-0030-00-201", "MNPCA-42-0052-00-101", "MNPCA-77-0027-00-100", "NALMS-4160", "SDDENR_WQX-SWLAZZZ4613A", "WIDNR_WQX-513154", "21IOWA-22320002", "21IOWA-22930001", "MNPCA-03-0328-00-206", "MNPCA-29-0157-00-101", "MNPCA-41-0043-00-204", "MNPCA-69-0694-00-117", "NALMS-3279", "SDDENR_WQX-SWLAZZZ2701A", "WIDNR_WQX-443072", "COEOMAHA_WQX-OAHLK1176DW", "MNPCA-04-0079-00-203", "MNPCA-18-0266-00-201", "MNPCA-31-0317-00-201", "MNPCA-46-0020-00-100", "MNPCA-62-0067-02-100", "MNPCA-73-0200-02-203", "NALMS-3706", "SDDENR_WQX-SWLAZZZ9702A", "WIDNR_WQX-143023", "USGS-480438099091500", "COEOMAHA_WQX-FTRLK0892DW", "MNPCA-04-0295-00-201", "MNPCA-18-0298-00-100", "MNPCA-31-0247-00-201", "MNPCA-31-0798-00-201", "MNPCA-38-0530-00-207", "MNPCA-60-0293-00-201", "MNPCA-73-0071-00-201", "NALMS-3686", "SDDENR_WQX-NCENBSRL12", "WIDNR_WQX-093097", "USGS-444041093181303", "EPA_GLNPO-HU90", "MNPCA-03-0030-00-101", "MNPCA-04-0237-00-201", "MNPCA-11-0225-00-201", "MNPCA-16-0645-00-202", "MNPCA-27-0165-00-201", "MNPCA-31-0193-00-204", "MNPCA-31-0687-00-205", "MNPCA-38-0390-00-202", "MNPCA-49-0079-00-100", "MNPCA-56-0352-00-201", "MNPCA-58-0058-00-201", "MNPCA-69-0589-00-101", "MNPCA-86-0127-00-100", "NALMS-4210", "SDDENR_WQX-SCHOBULL8", "TURTLEMT-GORINLET", "WIDNR_WQX-693090", "IL_EPA_WQX-RHA-3", "IL_EPA_WQX-VTU-1", "MNPCA-11-0059-00-103", "MNPCA-21-0160-00-202", "MNPCA-31-0198-00-101", "MNPCA-38-0361-00-205", "MNPCA-49-0137-00-203", "MNPCA-66-0052-00-211", "MNPCA-86-0178-00-101", "NALMS-3715", "NALMS-7198", "SDDENR_WQX-SWLAZZZ3201B", "WIDNR_WQX-053514", "WIDNR_WQX-683304", "USGS-441730090432900", "IL_EPA-RCE-3", "MNPCA-02-0042-00-102", "MNPCA-18-0136-00-102", "MNPCA-31-0216-00-208", "MNPCA-38-0193-00-201", "MNPCA-49-0024-00-201", "MNPCA-69-0414-00-202", "NALMS-2209", "NALMS-4103", "SDDENR_WQX-SWLAZZZ1608A", "SDDENR_WQX-SWLAZZZ9518A", "SDWRAP-SWLAZZZ5606", "WIDNR_WQX-10031994", "USGS-410309092490400", "USGS-454427094571811", "21IOWA-22990002", "EPA_GLNPO-HUFE", "MNPCA-03-0376-00-201", "MNPCA-27-0118-00-204", "MNPCA-38-0211-00-207", "MNPCA-38-0645-00-218", "MNPCA-69-0491-01-206", "MNPCA-86-0252-02-212", "NALMS-3881", "NALMS-7236", "SDDENR_WQX-SWLAZZZ5908C", "WIDNR_WQX-033136", "WIDNR_WQX-213048", "USGS-482812092500801", "21IOWA-22330003", "EPA_GLNPO-MI22", "MNPCA-01-0099-00-203", "MNPCA-17-0013-00-201", "MNPCA-31-0193-00-101", "MNPCA-38-0207-00-206", "MNPCA-39-0002-02-202", "MNPCA-62-0024-00-201", "MNPCA-86-0063-00-101", "NALMS-3453", "NALMS-4266", "SDDENR_WQX-SWLAZZZ1705C", "SDDENR_WQX-SWLAZZZ4834B", "SWO_OEP-LMN-L-LWC-067", "WIDNR_WQX-10021821", "WIDNR_WQX-513140", "USGS-454927096345000", "21NDHDWQ_WQX-380960", "21NDHDWQ_WQX-385482", "IL_EPA-RCC-2", "IL_EPA-RDU-2", "IL_EPA-RJD-1", "IL_EPA-RNK-3", "IL_EPA-RTJ-2", "IL_EPA_WQX-RDB-3", "IL_EPA_WQX-RJN-2", "IL_EPA_WQX-RTK-3", "MNPCA-03-0576-00-102", "MNPCA-11-0415-00-101", "MNPCA-17-0024-00-202", "MNPCA-29-0149-00-100", "MNPCA-32-0057-07-207", "MNPCA-38-0393-00-203", "MNPCA-38-0701-00-202", "MNPCA-56-0383-00-102", "MNPCA-69-0285-03-207", "MNPCA-77-0023-00-100", "NALMS-2345", "NALMS-3952", "NALMS-6935", "SDDENR_WQX-SWLAZZZ2411C", "SDWRAP-MITCH98LM13", "WIDNR_WQX-10001651", "WIDNR_WQX-10038067", "WIDNR_WQX-494004", "USGS-0690367630", "USGS-482958092484501", "21NDHDWQ_WQX-380512", "BMIC-WFBDP", "IL_EPA-RNM-3", "IL_EPA_WQX-RED-3", "IL_EPA_WQX-RPZF-3", "MNPCA-02-0072-00-401", "MNPCA-13-0011-00-202", "MNPCA-18-0226-00-100", "MNPCA-30-0035-00-201", "MNPCA-38-0080-00-202", "MNPCA-38-0400-00-215", "MNPCA-38-0817-00-212", "MNPCA-62-0069-00-113", "MNPCA-69-0834-00-101", "MNPCA-86-0031-00-103", "NALMS-3442", "NALMS-4304", "SDDENR_WQX-BDENEMYESLC", "SDDENR_WQX-SWLAZZZ3703C", "SDDENR_WQX-SWLAZZZ9308", "WIDNR_WQX-093142", "WIDNR_WQX-10002967", "WIDNR_WQX-10005491", "WIDNR_WQX-10007548", "WIDNR_WQX-10051229", "WIDNR_WQX-373006", "WIDNR_WQX-713340", "USGS-474600100515800", "11NPSWRD_WQX-APIS_ROCKY_IS", "21NDHDWQ_WQX-380867", "EPA_GLNPO-140", "IL_EPA_WQX-QLM-12-13", "IL_EPA_WQX-QLM-14-23", "IL_EPA_WQX-QLM-18-08", "INSTOR_WQX-8831", "INSTOR_WQX-8907", "INSTOR_WQX-8971", "INSTOR_WQX-9058", "INSTOR_WQX-9210", "LCOWIS_WQX-W4", "MNPCA-07-0101-00-101", "MNPCA-16-0360-00-209", "MNPCA-18-0195-00-201", "MNPCA-27-0035-02-100", "MNPCA-31-0438-00-102", "MNPCA-38-0104-00-201", "MNPCA-38-0404-00-226", "MNPCA-38-0645-00-240", "MNPCA-46-0096-00-202", "MNPCA-62-0007-00-202", "MNPCA-69-1297-00-100", "MNPCA-86-0227-00-100", "NALMS-3161", "NALMS-4279", "NALMS-7175", "SDDENR_WQX-EUREKAZD01", "SDDENR_WQX-SWLAZZZ5702C", "WIDNR_WQX-10001044", "WIDNR_WQX-10003055", "WIDNR_WQX-10004404", "WIDNR_WQX-10005729", "WIDNR_WQX-10007165", "WIDNR_WQX-10043410", "WIDNR_WQX-213047", "WIDNR_WQX-513129", "USGS-414237084391305", "USGS-414737085095205", "USGS-415425085480005", "USGS-420333084110005", "USGS-421212085591005", "USGS-422018083582005", "USGS-422622086022005", "USGS-423702083203405", "USGS-424723084262505", "USGS-430623083132205", "USGS-431940085181405", "USGS-433454085040405", "USGS-434832085092505", "USGS-440423084451905", "USGS-442124083523605", "USGS-443347083481705", "USGS-444319085511105", "USGS-445244085574605", "USGS-450712085120805", "USGS-452904084333705", "USGS-460646088300305", "USGS-461331089235705", "USGS-461949086505905", "USGS-463646088342905", "USGS-445223093042403", "USGS-475944099161600", "USGS-442024089090200", "11NPSWRD_WQX-ISRO_20", "21MICH-100140", "21MICH-150082", "21MICH-260032", "21MICH-300174", "21MICH-380287", "21MICH-450070", "21MICH-530104", "21MICH-610226", "21MICH-640034", "21MICH-720057", "21NDHDWQ_WQX-381105", "EPA_GLNPO-3", "IL_EPA_WQX-QLM-12-03", "INSTOR_WQX-8817", "INSTOR_WQX-8915", "INSTOR_WQX-9022", "INSTOR_WQX-9120", "INSTOR_WQX-9321", "MNPCA-03-0328-00-211", "MNPCA-13-0032-01-101", "MNPCA-16-0114-00-101", "MNPCA-16-0460-00-205", "MNPCA-16-0657-00-201", "MNPCA-18-0336-00-100", "MNPCA-27-0062-03-201", "MNPCA-31-0456-00-201", "MNPCA-32-0057-05-100", "MNPCA-38-0173-00-201", "MNPCA-38-0330-00-210", "MNPCA-38-0406-00-204", "MNPCA-38-0605-00-204", "MNPCA-38-0691-00-101", "MNPCA-44-0002-00-201", "MNPCA-56-0428-00-100", "MNPCA-66-0047-00-204", "MNPCA-69-0190-00-101", "MNPCA-69-0617-00-203", "MNPCA-69-0694-00-232", "MNPCA-74-0001-00-101", "NALMS-2341", "NALMS-3638", "NALMS-4422", "NALMS-7774", "SDDENR_WQX-SWLAZZZ1807a", "SDDENR_WQX-SWLAZZZ4208C", "SDDENR_WQX-SWLAZZZ5521B", "SDDENR_WQX-SWLAZZZ9520A", "SDWRAP-SWLAZZZ5709", "WIDNR_WQX-10000843", "WIDNR_WQX-10001654", "WIDNR_WQX-10002668", "WIDNR_WQX-10004294", "WIDNR_WQX-10004838", "WIDNR_WQX-10005978", "WIDNR_WQX-10006300", "WIDNR_WQX-10007350", "WIDNR_WQX-10040814", "WIDNR_WQX-353120", "WIDNR_WQX-643631", "USGS-380029089173601", "USGS-380420089161601", "USGS-423303085585405", "USGS-462856089563405", "USGS-463641095293901", "USGS-473303101544700", "USGS-455011089445600", 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}

I see that "Secchi depth" is in there, so that's probably my immediate problem...thanks!

jkreft-usgs commented 4 years ago

ah, something else we will have to sort out is passing back custom headers to give you more information