DOI-USGS / lake-temperature-lstm-static

Predict lake temperatures at depth using static lake attributes
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lake-temperature-model-prep training data #36

Closed AndyMcAliley closed 2 years ago

AndyMcAliley commented 2 years ago

This PR creates training data using data sourced from the lake-temperature-model-prep pipeline. It does the following:

Here's a DAG for forming the model-prep training data: training_data_model_prep

How to run the code

I've built out the pipeline up through rule create_training_data. So, to run this part of the pipeline:

snakemake -c1 2_process/out/model_prep/train.npz

How to review this PR

Level of review requested

The main things I'd like reviewed are:

  1. Do the pipeline additions and modifications make sense?
  2. Have any errors been introduced into the existing MNTOHA pipeline?

Where in the code to focus

Anything that's been changed is fair game, but the majority of the changes are in 2_process.smk.

Issues that will be addressed in upcoming PRs (so don't worry about them yet)