vignette on fitting hierarchical K

DOI-USGS / streamMetabolizer

streamMetabolizer uses inverse modeling to estimate aquatic metabolism (photosynthesis and respiration) from time series data on dissolved oxygen, water temperature, depth, and light.

http://usgs-r.github.io/streamMetabolizer/

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vignette on fitting hierarchical K #173

Open aappling-usgs opened 8 years ago

aappling-usgs commented 8 years ago

show both bayesian & multi-step MLE?
choosing parameters for priors
burnin time is important - make it long enough. 2000-4000 or so
look at the output, rhats<1.1

aappling-usgs commented 8 years ago

start the vignette with a big warning not to try the bayesian models without training in bayesian modeling

aappling-usgs commented 5 years ago

include options for "fixing" K