streamMetabolizer uses inverse modeling to estimate aquatic metabolism (photosynthesis and respiration) from time series data on dissolved oxygen, water temperature, depth, and light.
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Brief problem description
I am receiving this error message when running my model and am not receiving and model outputs because of it: Error in get_params.metab_model(object, uncertainty = "ci", fixed = "stars", :
can't find metabolism parameters GPP.daily, ER.daily, K600.daily
I am unsure how to resolve this error and have tried multiple different data sets including the dataset attached to the package from Bob Hall. I'm sure that this is an easy fix, but do not know what to change about my code given that I have specified GPP and ER parameters in bayes_specs.
What you saw on your computer
Include all code you ran (a minimal example) and all console output, errors, and warnings. Include a data file if needed.
Thanks for submitting your issue or question. We can address issues fastest if they are:
New - search past issues first to see if your question has already been answered. Reopen an old issue if your question was almost but not quite answered.
Complete - share all relevant code and console output/errors/warnings, in the order they were run and produced on your computer. Also include the output from a call to
devtools::session_info()to tell us about your computer's configuration.Reproducible - include all the data and code necessary for us/others to recreate the problem locally. It's fine to make up data if you can't share yours, as long as the problem still comes through.
Minimal - what is the smallest amount of data and code you can use to demonstrate the problem? This is less essential than the others but improves communication and our response time.
Delete these instructions before submitting your issue.
Brief problem description
I am receiving this error message when running my model and am not receiving and model outputs because of it: Error in get_params.metab_model(object, uncertainty = "ci", fixed = "stars", : can't find metabolism parameters GPP.daily, ER.daily, K600.daily I am unsure how to resolve this error and have tried multiple different data sets including the dataset attached to the package from Bob Hall. I'm sure that this is an easy fix, but do not know what to change about my code given that I have specified GPP and ER parameters in bayes_specs.
What you saw on your computer
Include all code you ran (a minimal example) and all console output, errors, and warnings. Include a data file if needed.
Output:
Session information
Run the following code line (or
sessionInfo()if that doesn't work) and paste in your output.