robohall
commented
13 hours ago Spencer,
If it were me I would simply use the calc_light function. We are working on a paper that shows that using such idealized light is not much of a problem. Then when you go to predict that day’s GPP, use the —real-- light from NASA. This way you also main independence of not using light to predict something estimated from the same light.
As for the error. 1. Try outside of a big tidyverse function to make sure you get the error outside of mutate. Then if brave you can make the recommended fix in the calc_light_merged function, see if now works, and get a pull request.
But I would use calc_light.
Bob
On Oct 22, 2024, at 1:38 PM, Spencer Tassone, Ph.D. @.***> wrote:
Brief problem description
I am trying to use the calc_light_merged function to model PAR based on observed PAR and the smoothed PAR produced with calc_light. However, the calc_light_merged function produces an error caused by a function that is deprecated in dplyr (rename_vars). Is there a work around for this issue?
1. Load libraries ----
library(tidyverse) library(nasapower) library(streamMetabolizer)
2. Download shortwave radiation from NASA POWER ----
nasa_par <- get_power( community = 'ag', pars = c('ALLSKY_SFC_PAR_TOT'), # All Sky Surface PAR Total (W/m^2) temporal_api = 'hourly', lonlat = c(-78.6, 38.7), dates = '2010-09-19')
3. Some data wrangling to create the 2-column data frame needed for calc_light_merged ----
nasa_par_df <- nasa_par %>% mutate(dateTime = make_datetime(year = YEAR, month = MO, day = DY, hour = HR), solar.time = calc_solar_time(dateTime, -78.6), # throws a warning but still works light = convert_SW_to_PAR(ALLSKY_SFC_PAR_TOT)) %>% select(solar.time, light) %>% data.frame()
> Warning: There was 1 warning in
mutate().> ℹ In argument:
solar.time = calc_solar_time(dateTime, -78.6).> Caused by warning in
lookup_timezone():> ! Google timezone lookup now requires an API key; see http://g.co/dev/maps-no-account or provide the timezone
max_PAR_value <- max(nasa_par_df$light, na.rm = TRUE)
4. Apply calc_light_merged ----
light_mod <- nasa_par_df %>% mutate(light = calc_light_merged(PAR.obs = nasa_par_df, solar.time = solar.time, latitude = 38.7, longitude = -78.6, max.PAR = max_PAR_value))
> Error in
mutate():> ℹ In argument:
light = calc_light_merged(...).> Caused by error:
> ! error in evaluating the argument 'object' in selecting a method for function 'deunitted':
rename_vars()was deprecated in dplyr 0.8.4 and is now defunct.> ℹ Please use
tidyselect::vars_rename()instead.Created on 2024-10-22 with reprex v2.1.1 https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Freprex.tidyverse.org%2F&data=05%7C02%7Cbob.hall%40flbs.umt.edu%7Cca0d90c1329a4e105ce708dcf2d12915%7C68407ce503da49ffaf0a724be0d37c9d%7C0%7C0%7C638652227355026839%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=H5Jihx58yr01SSKzpJjBwV%2B84YPjBcbAoiVlDQoNXFw%3D&reserved=0 devtools::session_info()
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Brief problem description
I am trying to use the
calc_light_mergedfunction to model PAR based on observed PAR and the smoothed PAR produced withcalc_light. However, thecalc_light_mergedfunction produces an error caused by a function that is deprecated indplyr(rename_vars). Is there a work around for this issue?Created on 2024-10-22 with reprex v2.1.1
Created on 2024-10-22 with reprex v2.1.1