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DRL / blobtools-light

Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
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Input to -cov #1

Open mw55309 opened 9 years ago

mw55309 commented 9 years ago

Hi

I don't have coverage as I am using reads, not contigs; my reads are varying lengths, so instead I used lengths as a substitute for coverage. I know, it doesn't make sense, but anyway...

Unfortunately I just get a ingle line of dots at 10^-1. Input to -cov looks like this:

ch250_file12 14703 ch1_file13 422 ch231_file4 7617 ch146_file73 4737 ch465_file46 8503 ch147_file41 11635 ch179_file5 7841 ch393_file30 9176 ch393_file5 11383 ch472_file70 9547 ch262_file4 9239

Which appears to be the right format. What am I doing wrong?

Cheers Mick

DRL commented 9 years ago

Hi Mick, the COV-file parser looks for : string + "\t" + integer + "." + integer

so if you append ".0" to each coverage value it should work ... and make sure they are tab-separated.

Will fix this behaviour in the next release ...

cheers,

dom